species:   Rhsol
pid:       PID0535
parent:    Rhi-milR-34
paralog:   
locus:     KB317717.1:9573-9645
matures:   ['AGGGGUGGCUGUUGAAUUGAG', 'GGUUCUUUAGCCAGCUU']
srr:       SRR1994871
genome:    /Users/jax/+Genomes/Fungal_genomes/Rhsol.AFRT00000000.1_scaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994871.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994871.cram KB317717.1:9573-9645

2 out of bounds
9 alignments
4 proper strand
4 stranded perfect matches

    ***********************                  ************************    
UUACACAGUGGUGGUUCUUUAGCCAGCUUCAUUACCAUUGACAGGGGUGGCUGUUGAAUUGAGCACAAAUUUU
.......(((.((((((..((((((.(((((.......)))...)).))))))..))))).).))).......
------------------------------------------AGGGGUGGCUGUUGAAUUGAG---------- l=21 a=0 c
------------GGUUCUUUAGCCAGCUU-------------------------------------------- l=17 a=0 c*
-----------------------------------------------UGGCUGUUGAAUUGAGCACAAA---- l=22 a=1 ma
------AGUGGUGGUUCUUUAGCCAGC---------------------------------------------- l=21 a=0 ma*

-----------------------------------------------UGGCUGUUGAAUUGAGCACAAA---- l=22 a=1 (ma)
------------------------------------------AGGGGUGGCUGUUGAAUUGAGC--------- l=22 a=1 
-----------------------------------------CAGGGGUGGCUGUUGAAUUGAGCA-------- l=24 a=1 
-----------------------------------------CAGGGGUGGCUGUUGAAUUGAGCAC------- l=25 a=1 

mb-01011
ax-1001011
ku-01
ss-100110001100
fn-001
